PCR Ct data revealed! For the first time we get a look at the Ct values from a state health lab - these cover March-June 2020. First the scatter of all 5036 positive tests:
Next we look at the distribution of Ct values for all tests:
Finally, the temporal shift in percentage of tests with Ct > 32 (arguably a fair cutoff for infectious viral loads).
We can see even during the peak pandemic months 25% of tests were > 32 - and this was when mainly symptomatic folks were tested. In May-June as many as 2/3 of tests were non-infectious. The virus was waning AND testing protocols changing.
So we have clear indication that over the entire period, at least a quarter of tests were effectively false positives, with as many as 2/3 being false positives in May/June.
And the temporal shift in Ct distributions should be highly valuable in tracking the disease. Certainly these data are very important yet accessing it is extremely difficult! Why?
Andy’s take: https://twitter.com/andrewbostom/status/1337457875518697473
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